fsl_usage
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fsl_usage [2016/05/24 22:23] mgstauff [Using FSL WITHOUT SGE] |
fsl_usage [2016/05/24 22:23] (current) mgstauff |
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| ====== Using FSL ====== | ====== Using FSL ====== | ||
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| + | ===== Requesting More Memory ===== | ||
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| + | If your jobs are killed because of insufficient memory, it means most likely that the portions run via SGE are hitting the default memory limit. To request more, do so via the [[using_ogs_sge# | ||
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| + | **NOTE** however that this will make the request for **all** jobs your run, which is an inefficient use of memory for you and everyone else, so be careful to always change this file before running other jobs that don't need as much memory (e.g. simply comment-out or deactivate any lines by adding a hash mark (#) by itself at the beginning of the line in your .sge_request file). I'm hoping to work out a more flexible way to request more memory and will let everyone know if I work it out. | ||
| ===== Commands that Use SGE ===== | ===== Commands that Use SGE ===== | ||
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| If your command gets killed because it takes too much CPU time running on chead, email the admin to learn how to work around this. This is very unlikely to be an issue. | If your command gets killed because it takes too much CPU time running on chead, email the admin to learn how to work around this. This is very unlikely to be an issue. | ||
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| - | ===== Requesting More Memory ===== | ||
| - | |||
| - | If your jobs are killed because of insufficient memory, it means most likely that the portions run via SGE are hitting the default memory limit. To request more, do so via the [[using_ogs_sge# | ||
| - | |||
| - | **NOTE** however that this will make the request for **all** jobs your run, which is an inefficient use of memory for you and everyone else, so be careful to always change this file before running other jobs that don't need as much memory (e.g. simply comment-out or deactivate any lines by adding a hash mark (#) by itself at the beginning of the line in your .sge_request file). I'm hoping to work out a more flexible way to request more memory and will let everyone know if I work it out. | ||
fsl_usage.1464128585.txt.gz · Last modified: 2016/05/24 22:23 by mgstauff
