The stimuli run from blue to green in the experimental program configuration files. The following stimulus labels were mapped from the sequence to the stimuli:
Sequence label | Stimulus |
---|---|
0 | null-trial (background) |
1 | Blue |
2 | |
3 | |
4 | |
5 | |
6 | |
7 | |
8 | |
9 | |
A | Green |
Given 10 stimuli and a null-trial, a k=11, n=3 de Bruijn sequence (1331 elements) was created using the de bruijn cycle software. A trial duration of 1100 msecs and a linear adaptation neural model were applied. The sequence was obtained with an iterative approach that searched across 7000 sequences with different guide functions. The resulting sequence, shown below, has most of its power concentrated at the 17th frequency.
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 0 1 2 3 4 5 6 7 8 9 -1 1 0 1 2 3 4 5 6 7 8 -1 2 1 0 1 2 3 4 5 6 7 -1 3 2 1 0 1 2 3 4 5 6 -1 4 3 2 1 0 1 2 3 4 5 -1 5 4 3 2 1 0 1 2 3 4 -1 6 5 4 3 2 1 0 1 2 3 -1 7 6 5 4 3 2 1 0 1 2 -1 8 7 6 5 4 3 2 1 0 1 -1 9 8 7 6 5 4 3 2 1 0
7089899A99988870320313235757A851628393A4A49392A19291829382A5A509696353123245665554443332223345434653525263738384A3A2A39191A2928071A48282727302586421343212211120889A08777054557890A8695017294A59271937181A1A3819492617396A7464676542344577886667766446608656579758500183A51A52A281804A27A262A400094848630A987876706688AAA0335567867564534240636941717A4195A1849174A17916185A472840269790341214422055331133663308A9A89764102749401A61A716A372A6295915A304951759625142067990855885468966997755231460358A8A7A6A5826A4619616925A2507268259471595841405325403652244114310303779860568A6024859361504837A36A163A35A693004160952796060AA90570A05210844083378A065895305875285836275A7253946A24A6395710073A6847A75106476879AA884581243560125632674257638A53852968307A5724964A736318A428A2028686A874367A978569A7020A760038942651368536047350297209359714A824186109101681515802364306803A96598A34784376985740A64097AA795480924748178317614973164901524276A650A562463404387A0A43A84690691315379452010A31974157349A54983518931A8348A156A9561301413541A943902154753A78204626075062165A801374793278002A7732891489200A2170110512648733862309098429042A934A923754A0225519006A01982380612709A67218723A104074511559079219A450503970059A1388329A32A8147045996713A099550821AA662078166AA55A912871298107622661177A145AA44774488227722880A12A0449944AA239A229933AA339805A0080813991188119922AA11A0707711673
Correlation | Detection Power |
---|---|
0.553022 | 0.557784 |
Additional blank (“zero”) trials were added to the sequence to increase the power of the main effect (all stimuli vs. null-trials) and to increase the total length of the sequence to 1500 elements (which is an integer multiple of TRs and is divisible into 5 scans).
In summary:
TRs | seconds | trials |
---|---|---|
550 | 1650 | 1500 |
For use in fMRI data collection, each instance of the “zero” label was first doubled. Then, 48 zero labels were randomly selected to be doubled again, resulting in a sequence with 1500 elements:
700089899A99988870003200313235757A851628393A4A49392A19291829382A5A50009696353123245665554443332223345434653525263738384A3A2A39191A29280071A4828272730025864213432122111200889A000877700545578900A869500017294A59271937181A1A3819492617396A74646765423445778866677664466008656579758500000183A51A52A2818004A27A262A400000000948486300A9878767006688AAA00335567867564534240000636941717A4195A1849174A17916185A47284002697900034121442200553311336633008A9A8976410027494001A61A716A372A6295915A3000495175962514200067990008558854689669977552314600358A8A7A6A5826A4619616925A250072682594715958414005325400036522441143100300377986000568A600248593615004837A36A163A35A69300000416009527960006000AA90057000A00052100844000083378A00658953005875285836275A7253946A24A639571000073A6847A751006476879AA8845812435600125632674257638A538529683007A5724964A736318A428A20028686A874367A978569A700200A7600000389426513685360047350000297200009359714A8241861000091000168151580002364300680003A96598A347843769857400A6400097AA7954800092474817831761497316490001524276A6500A5624634004387A00A43A8469000691315379452001000A31974157349A54983518931A8348A156A95613001413541A9439002154753A78200462600750062165A8001374793278000002A7732891489200000A2170011005126487338623009009842900042A934A923754A00022551900006A001982380061270009A67218723A1004000745115590079219A45005003970000059A1388329A32A814700045996713A00995500821AA6620078166AA55A9128712981007622661177A145AA447744882277228800A12A00449944AA239A229933AA33980005A00000800813991188119922AA11A007007711673
This was then broken into 5 sections of 300 elements (which is an integer multiple of 30 and trials with TRs). Each sub-sequence repeats the last 30 elements from the prior sub-sequence at the onset. This allows the first 11 seconds of each scan to be discarded prior to knitting together the functional data. Each complete sub-sequence is therefore 330 elements, corresponding to 121 TRs. In analysis, the first 11 TRs of each raw DICOM file is discarded, and the resulting 110 TR data files concatenated and modeled with the complete sequence above (plus zero-padding with 48 blank trials at the end).
The resulting sub-sequences are:
ColorSubSeq_1.txt | 3991188119922AA11A007007711673700089899A99988870003200313235757A851628393A4A49392A19291829382A5A50009696353123245665554443332223345434653525263738384A3A2A39191A29280071A4828272730025864213432122111200889A000877700545578900A869500017294A59271937181A1A3819492617396A74646765423445778866677664466008656579758500000183A51A52A2818004A2 |
ColorSubSeq_2.txt | 79758500000183A51A52A2818004A27A262A400000000948486300A9878767006688AAA00335567867564534240000636941717A4195A1849174A17916185A47284002697900034121442200553311336633008A9A8976410027494001A61A716A372A6295915A3000495175962514200067990008558854689669977552314600358A8A7A6A5826A4619616925A2500726825947159584140053254000365224411431003 |
ColorSubSeq_3.txt | 58414005325400036522441143100300377986000568A600248593615004837A36A163A35A69300000416009527960006000AA90057000A00052100844000083378A00658953005875285836275A7253946A24A639571000073A6847A751006476879AA8845812435600125632674257638A538529683007A5724964A736318A428A20028686A874367A978569A700200A7600000389426513685360047350000297200009 |
ColorSubSeq_4.txt | 426513685360047350000297200009359714A8241861000091000168151580002364300680003A96598A347843769857400A6400097AA7954800092474817831761497316490001524276A6500A5624634004387A00A43A8469000691315379452001000A31974157349A54983518931A8348A156A95613001413541A9439002154753A78200462600750062165A8001374793278000002A7732891489200000A217001100 |
ColorSubSeq_5.txt | 002A7732891489200000A2170011005126487338623009009842900042A934A923754A00022551900006A001982380061270009A67218723A1004000745115590079219A45005003970000059A1388329A32A814700045996713A00995500821AA6620078166AA55A9128712981007622661177A145AA447744882277228800A12A00449944AA239A229933AA33980005A00000800813991188119922AA11A007007711673 |
Each subject then viewed these sequence in forward order, and then in a second scanning session in reverse order.
The analysis of the fMRI data was conducted within in a general linear model using covariates derived from the stimulus sequence.
<WRAP download round box 33%>Sequence and covariates
https://cfn.upenn.edu/aguirreg/public/coloradapt/ColorAdapt_DemoMatrices.mat
Matlab .mat
file containing the stimulus sequence and the covariates used in analysis.</WRAP>
The set of covariates included: