We provide information regarding our methods for our published work. Methods pages that are not public are indicated by a lock symbol.

• The CfN cluster -- software and CPUs
• location_of_data_on_cfn_cluster
• arrangement_of_data_directory
• Downloading data from CD and renaming
• standard_prep-script_and_its_components
• introduction_to_the_voxbo_scheduler
• information_on_voxbo_file_formats
• details_on_pre-processing_steps
• basic_information_on_the_glm
• condition_functions
• covariates_of_the_g_matrix
• voxbo_script_library

• diffusion_tensor_imaging
• canine_anatomy_analysis
• freesurfer
• paraview
• Calculation of diffeomorphic warp for VBM analysis
• Collection of B0 image and EPI un-warping

• retinotopic_mapping_procedures
• receptive_field_mapping_procedures
• distributed_pattern_analysis
• creating_direct_effect_and_training_cubs
• analysis_of_a_cco_experiment_with_voxbo
• pulse-oximetry_during_fmri_scanning
• eye_tracking_during_fmri_scanning
• group_statistical_analysis_with_spherical_atlas